PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00047337001

Common Name

GSBRNA2T00047337001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 217aa MW: 23848.1 Da PI: 5.27

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00047337001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.2	1.2e-42	54	151	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+d+++s+vyeA ar+rdPvyG++g i +lq+q+++l GSBRNA2T00047337001 54 PCAACKILRRRCAEKCVLAPYFPPTDPAKFIIAHRVFGASNIIKFLQELPESQRTDTVNSMVYEAGARMRDPVYGCAGAIYHLQRQVCEL 143 7*************************************************************************************** PP DUF260 91 kaelallk 98 +a+la+++ GSBRNA2T00047337001 144 QAQLAKTQ 151 **9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.02	53	154	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-42	54	151	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MLKMETFGGI SVAAPTSSAV EKTTTPANSA SPTSSPPPPL SPEQPQQQTV VLSPCAACKI 60 LRRRCAEKCV LAPYFPPTDP AKFIIAHRVF GASNIIKFLQ ELPESQRTDT VNSMVYEAGA 120 RMRDPVYGCA GAIYHLQRQV CELQAQLAKT QVDLVSMQLQ RSDLLELLHK TEQANLSEQQ 180 EGQQNMSFEM TNDLGFLDCN NNNNNSSMLW SDPLWT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00047337001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240985	1e-156	AC240985.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008O16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013726732.1	1e-148	PREDICTED: LOB domain-containing protein 11-like
Swissprot	Q9SK08	1e-105	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A078H144	1e-162	A0A078H144_BRANA; BnaC03g46840D protein
STRING	Bra000491.1-P	1e-130	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-101	LOB domain-containing protein 11

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]